species:   Rhsol
pid:       PID0586
parent:    Rhi-milR-149
paralog:   
locus:     KB317749.1:155893-155976
matures:   ['UGGUCGGCACAUGUUGUAGGAG', 'CCUACUGCACCAGCUAUA']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317749.1:155893-155976

5 out of bounds
33 alignments
29 proper strand
29 stranded perfect matches

*********************                             *************************         
GGACCUACUGCACCAGCUAUACAAGGGCGUGUUCAAAGACCACCUCUCAAAAUGGUCGGCACAUGUUGUAGGAGCAAAAGAGUU
(..(((((.(((((.(((((...((((.(((.((...)).)))))))....))))).))....))).)))))..).........
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAG---------- l=22 a=2 c
---CCUACUGCACCAGCUAUA--------------------------------------------------------------- l=18 a=0 c*
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAGC--------- l=23 a=12 ma
--ACCUACUGCACCAGCUAUA--------------------------------------------------------------- l=19 a=0 ma*

-----------------UAUACAAGGGCGUGUUCAAAGA--------------------------------------------- l=22 a=1 
-----------------UAUACAAGGGCGUGUUCAAAGACC------------------------------------------- l=24 a=2 
-----------------UAUACAAGGGCGUGUUCAAAGACCA------------------------------------------ l=25 a=1 
------------------------------------------------AAAAUGGUCGGCACAUGUUGUAGG------------ l=24 a=1 
-------------------------------------------------AAAUGGUCGGCACAUGUUGUAGG------------ l=23 a=1 
--------------------------------------------------AAUGGUCGGCACAUGUUGUAGG------------ l=22 a=1 
--------------------------------------------------AAUGGUCGGCACAUGUUGUAGGAG---------- l=24 a=1 
----------------------------------------------------UGGUCGGCACAUGUUGUAG------------- l=19 a=2 
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAG---------- l=22 a=2 (c)
----------------------------------------------------UGGUCGGCACAUGUUGUAGGAGC--------- l=23 a=12 (ma)
------------------------------------------------------GUCGGCACAUGUUGUAGGAGC--------- l=21 a=1 
-------------------------------------------------------UCGGCACAUGUUGUAGGAGCA-------- l=21 a=1 
--------------------------------------------------------CGGCACAUGUUGUAGGAGCA-------- l=20 a=1 
-----------------------------------------------------------CACAUGUUGUAGGAGCAAAAGAG-- l=23 a=1 
-----------------------------------------------------------CACAUGUUGUAGGAGCAAAAGAGU- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101000
fn-111
